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A 2O(n1-(1/d)log n) Time Algorithm for d-Dimensional Protein Folding in the...
Bin Fu, Wei Wang: A 2O(n1-(1/d)log n) Time Algorithm for d-Dimensional Protein Folding in the HP-Model. ICALP 2004: 630-644
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Computational Analysis and Prediction of the Binding Motif and Protein...
Tingjun Hou, Ken Chen, William A. McLaughlin, Benzhuo Lu, Wei Wang: Computational Analysis and Prediction of the Binding Motif and Protein Interacting Partners of the Abl SH3 Domain. PLoS Comput. Biol....
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Geometric Separators and Their Applications to Protein Folding in the HP-Model.
Bin Fu, Wei Wang: Geometric Separators and Their Applications to Protein Folding in the HP-Model. SIAM J. Comput. 37(4): 1014-1029 (2007)
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On the detection of functionally coherent groups of protein domains with an...
William A. McLaughlin, Ken Chen, Tingjun Hou, Wei Wang: On the detection of functionally coherent groups of protein domains with an extension to protein annotation. BMC Bioinform. 8 (2007)
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High-throughput identification of interacting protein-protein binding sites.
Jo-Lan Chung, Wei Wang, Philip E. Bourne: High-throughput identification of interacting protein-protein binding sites. BMC Bioinform. 8 (2007)
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ChromaSig: A Probabilistic Approach to Finding Common Chromatin Signatures in...
Gary Chung Hon, Bing Ren, Wei Wang: ChromaSig: A Probabilistic Approach to Finding Common Chromatin Signatures in the Human Genome. PLoS Comput. Biol. 4(10) (2008)
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Prediction of regulatory elements in mammalian genomes using chromatin...
Kyoung-Jae Won, Iouri Chepelev, Bing Ren, Wei Wang: Prediction of regulatory elements in mammalian genomes using chromatin signatures. BMC Bioinform. 9 (2008)
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GBNet: Deciphering regulatory rules in the co-regulated genes using a Gibbs...
Li Shen, Jie Liu, Wei Wang: GBNet: Deciphering regulatory rules in the co-regulated genes using a Gibbs sampler enhanced Bayesian network approach. BMC Bioinform. 9 (2008)
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Discovery and Annotation of Functional Chromatin Signatures in the Human Genome.
Gary Chung Hon, Wei Wang, Bing Ren: Discovery and Annotation of Functional Chromatin Signatures in the Human Genome. PLoS Comput. Biol. 5(11) (2009)
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A Novel Knowledge-driven Systems Biology Approach for Phenotype Prediction...
Rui Chang, Wei Wang: A Novel Knowledge-driven Systems Biology Approach for Phenotype Prediction Upon Genetic Intervention. BIOCOMP 2010: 724-733
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Prediction of quantitative phenotypes based on genetic networks: a case study...
Li Shen, Iouri Chepelev, Jie Liu, Wei Wang: Prediction of quantitative phenotypes based on genetic networks: a case study in yeast sporulation. BMC Syst. Biol. 4: 128 (2010)
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A Novel Knowledge-Driven Systems Biology Approach for Phenotype Prediction...
Rui Chang, Robert Shoemaker, Wei Wang: A Novel Knowledge-Driven Systems Biology Approach for Phenotype Prediction upon Genetic Intervention. IEEE ACM Trans. Comput. Biol. Bioinform. 8(5): 1170-1182 (2011)
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Systematic Search for Recipes to Generate Induced Pluripotent Stem Cells.
Rui Chang, Robert Shoemaker, Wei Wang: Systematic Search for Recipes to Generate Induced Pluripotent Stem Cells. PLoS Comput. Biol. 7(12) (2011)
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Assessing the Performance of the MM/PBSA and MM/GBSA Methods. 1. The Accuracy...
Tingjun Hou, Junmei Wang, Youyong Li, Wei Wang: Assessing the Performance of the MM/PBSA and MM/GBSA Methods. 1. The Accuracy of Binding Free Energy Calculations Based on Molecular Dynamics...
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Assessing the performance of the molecular mechanics/Poisson Boltzmann...
Tingjun Hou, Junmei Wang, Youyong Li, Wei Wang: Assessing the performance of the molecular mechanics/Poisson Boltzmann surface area and molecular mechanics/generalized Born surface area methods. II....
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Recipes and mechanisms of cellular reprogramming: a case study on budding...
Shengchao Ding, Wei Wang: Recipes and mechanisms of cellular reprogramming: a case study on budding yeast Saccharomyces cerevisiae. BMC Syst. Biol. 5: 50 (2011)
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Prediction of peptides binding to the PKA RIIα subunit using a hierarchical...
Tingjun Hou, Youyong Li, Wei Wang: Prediction of peptides binding to the PKA RIIα subunit using a hierarchical strategy. Bioinform. 27(13): 1814-1821 (2011)
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RFECS: A Random-Forest Based Algorithm for Enhancer Identification from...
Nisha Rajagopal, Wei Xie, Yan Li, Uli Wagner, Wei Wang, John A. Stamatoyannopoulos, Jason Ernst, Manolis Kellis, Bing Ren: RFECS: A Random-Forest Based Algorithm for Enhancer Identification from...
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Characterizing Binding of Small Molecules. II. Evaluating the Potency of...
Bo Ding, Nan Li, Wei Wang: Characterizing Binding of Small Molecules. II. Evaluating the Potency of Small Molecules to Combat Resistance Based on Docking Structures. J. Chem. Inf. Model. 53(5):...
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Characterization of Small Molecule Binding. I. Accurate Identification of...
Bo Ding, Jian Wang, Nan Li, Wei Wang: Characterization of Small Molecule Binding. I. Accurate Identification of Strong Inhibitors in Virtual Screening. J. Chem. Inf. Model. 53(1): 114-122 (2013)
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